Ok cool!
Let’s do 2 things:
1.) Update spark-cli with npm update -g spark-cli
2.) Check the spark-cli version with spark --version. Make sure you have 0.3.97
3.) Place the core in DFU mode (Blinking yellow)
4.) Re-flash the core factory firmware with: spark flash --factory tinker
5.) Factory reset the core and watch the behavior.
If everything goes ok, we will do a spark flash --usb cc3000 to patch the CC3000 manually once again.
Let me know how it goes 