This should be a simple one…
If i’m using both of these commands, does the order matter in which the commands are listed?
SYSTEM_THREAD(ENABLED);
SYSTEM_MODE(SEMI_AUTOMATIC);
The order is not important 
Great, thanks for the quick reply.
Oh, one more random question…
Is there a way from running code to determine if you enabled SYSTEM_THREAD?
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and, while I’m asking…how about a way to determine what mode you’re using?
Not that I know of for either.
I’d think there is a way to determine - since the system needs the info to act accordingly - but whether these “flags” are exposed for application code or not I can’t say.
However, what use-case are you thinking of?
When you are writing your code you should be aware of your choice 
And libraries should be ignorant of the choice IMO.
Other than me liking to print lots of diag info when I’m compiling in debug mode, I can’t say there is a great use case for these options. However, I look at other pieces of the SDK and sometimes there are routines I don’t see a need for but I’m sure somebody wants. Of course, if you program it, you would know which way you went. Just a thought…